Publications

Publications
Detection of Mutation-Induced Conformational Changes in an Intrinsically Disordered Protein by Double Quantum Coherence Electron Spin Resonance Methodology
Aritro Sinha Roy, Karen Tsay, Peter P. Borbat, Audra Destefano, Songi Han, Madhur Srivastava, and Jack H. Freed
Journal: Journal of American Chemical Society
Year: 2026
Issue: Volume 148, 2
DOI: 10.1021/jacs.5c16298
Grants: NIGMS R24GM146107, NIGMS R35GM151218, NIGMS R35GM148272, NIGMS R35GM136411, NIGMS R01AG056058

Development of an EPR-based Methodology to Study Protein-lipid Interaction
Clara Piersson, Shikhar Prakash, Victoria Lublin, Melanie Rossotti, Baptiste Fischer, Madhur Srivastava, Yann Fichou

Journal: Biophysical Chemistry
Year: 2026
Issue: Volume 329, 107550
DOI: 10.1016/j.bpc.2025 .107550
Grants: NIGMS R24GM146107, NIGMS R35GM151218

In Vivo Cervical Precancer Classification Through Multifractal Analysis of Spectral Fluctuations in Intrinsic Fluorescence Spectra
Gyana Ranjan Sahoo, Amar Nath Sah, Madhur Srivastava, Prasanta K Panigrahi, Asima Pradhan

Journal: Journal of Biophotonics
Year: 2025
Issue: In Press (e202500282)
DOI: 10.1002/jbio.202500282
Grants: NIGMS R24GM146107, NIGMS R35GM148272, NIGMS R35GM151218

Unraveling Power Consumption Pattern Using Multidimensional Scaling and Clustering Analysis
Utkarsh Misra, Gyana Ranjan Sahoo, Shikhar Prakash, Madhur Srivastava

Journal: IEEE Access
Year: 2025
Issue: Volume 13, pages 13573-13583
DOI: 10.1109/ACCESS.2025.3529470

Localized Reconstruction of Multimodal Distance Distribution from DEER data of Biopolymers
Karen Tsay, Timothy Keller, Yann Fichou, Jack H Freed, Songi Han, Madhur Srivastava

Journal: bioRxic
Year: 2025
DOI: 10.1101/2025.01.02.631084
PMCID: PMC11722431 PMID: 39803469

Ultrahigh Surface Area Nanoporous Carbons Synthesized via Hypergolic and Activation Reactions for Enhanced CO ₂ Capacity and Volumetric Energy Density
Nikolaos Chalmpes, Prince Ochonma, Iosif Tantis, Ahmed Wasel Alsmaeil, Tufa Enver Assafa, Manav Tathacharya, Madhur Srivastava, Greeshma Gadikota, Athanasios B Bourlinos, Theodore Steriotis, Emmanuel P Giannelis

Journal: ACS Nano
Year: 2024
Issue: Volume 18, Issue 49, Pages 33491-33504
DOI: 10.1021/acsnano.4c10531

MRI Denoising Using Pixel-wise Threshold Selection
Nimesh Srivastava, Gyana Ranjan Sahoo, Henning U. Voss, Sumit N. Niogi, Jack H. Freed, Madhur Srivastava

Journal: IEEE Access
Year: 2024
Issue: Volume 12, pages 135730-135745
DOI: 10.1109/ACCESS.2024.3449811
Grants: NIGMS R24GM146107, NIGMS R35GM148272, NIGMS R35GM151218, NSF 2044599

Cervical Pre-cancer Detection Through Wavelet Denoising and Random Forest Classification
Gyana Ranjan Sahoo, Amar Nath Sah, Madhur Srivastava, Asima Pradhan

Journal: Biomedical Spectroscopy, Microscopy, and Imaging III
Year: 2024
Issue: Volume 13006, pages 144-151
DOI: 10.1117/12.3021995
Grants: NIGMS R24GM146107 and NIGMS R35GM151218

Adaptive Image Quantization for Discrimination of Cervical Pre-cancer
Gyana Ranjan Sahoo, Jaidip Jagtap, Prasanta Kumar Panigrahi, Asima Pradhan, Madhur Srivastava

Journal: Biomedical Spectroscopy, Microscopy, and Imaging III
Year: 2024
Issue: Volume 13006, pages 217-225
DOI: 10.1117/12.3021982
Grants: NIGMS R24GM146107 and NIGMS R35GM151218

Optimal Wavelet Selection for Signal Denoising
Gyana Ranjan Sahoo, Jack H. Freed, Madhur Srivastava

Journal: IEEE Access
Year: 2024
Issue: Volume 12, pages 45369-45380
DOI: 10.1109/ACCESS.2024.3377664
Grants: NIGMS R24GM146107, NIGMS R35GM151218 and NIGMS R35GM148272

Differentiating Unimodal and Multimodal Distributions in Pulsed Dipolar Spectroscopy
Aritro Sinha Roy, Jack H. Freed, Madhur Srivastava

Journal: Applied Magnetic Resonance
Special Issue: Wayne Hubbell - on the Occasion of His 80th Birthday
Year: 2024
Issue: Volume 55, pages 219–237
DOI: 10.1007/s00723-023-01616-w
PMCID: PMC10418556
Grants: NIGMS R24GM146107 and NIGMS R35GM148272

Time-frequency Analysis of Two-dimensional Electron Spin Resonance Signals
Gyanaranjan Sahoo, Aritro Sinha Roy, Madhur Srivastava

Journal: The Journal of Physical Chemistry A
Year: 2023
Issue: Volume 127, pages 7793 - 7801
DOI: 10.1021/acs.jpca.3c02708
PMCID: PMC10529365
Grants: NIGMS R24GM146107 and NIGMS R35GM148272

A Simulation Independent Analysis of Single-and Multi-Component cw ESR Spectra
Aritro Sinha Roy, Boris Dzikovski, Dependu Dolui, Olga Makhlynets, Arnab Dutta, Madhur Srivastava

Journal: Magnetochemistry
Year: 2023
Issue: Volume 9, pages 112
DOI: 10.3390/magnetochemistry9050112
PMCID: PMC10357894
Grants: NIGMS R24GM146107

Unsupervised analysis of small molecule mixtures by wavelet-based super-resolved NMR
Aritro Sinha Roy, Madhur Srivastava

Journal: Molecules
Year: 2023
Issue: Volume 28, pages 792
DOI: 10.3390/molecules28020792
PMCID: PMC9866129
Grants: NSF 2044599

Analysis of Small-Molecule Mixtures by Super-Resolved ¹H NMR Spectroscopy
Aritro Sinha Roy, Madhur Srivastava

Journal: The Journal of Physical Chemistry A
Year: 2022
Issue: Volume 126, pages 9108-9113
DOI: 10.1021/acs.jpca.2c06858
PMCID: PMC10228708
Grants: NSF 2044599

Hyperfine Decoupling of ESR Spectra Using Wavelet Transform
Aritro Sinha Roy, Madhur Srivastava

Journal: Magnetochemistry
Year: 2022
Issue: Volume 8, pages 32
DOI: 10.3390/magnetochemistry8030032
PMCID: PMC10357921
Grants: NSF 2044599

Revisiting Signal Analysis in the Big Data Era
Madhur Srivastava

Journal: Nature Computational Science
Year: 2022
Issue: Volume 2, pages 70-71
DOI: 10.1038/s43588-022-00210-7
PMCID: PMC10238072

Determining Decomposition Levels for Wavelet Denoising Using Sparsity Plot
William Bekerman, Madhur Srivastava

Journal: IEEE Access
Year: 2021
Issue: Volume 9, pages 110582-110591
DOI: 10.1109/ACCESS.2021.3103497
Grants: NSF 2044599

Extraction of Weak Spectroscopic Signals with High Fidelity: Examples from ESR
Madhur Srivastava, Boris Dzikovski, Jack H Freed

Journal: The Journal of Physical Chemistry A
Year: 2021
Issue: Volume 125, pages 4480-4487
DOI: 10.1021/acs.jpca.1c02241
PMCID: PMC8317606
Grants: NIGMS P41GM103521

Engineered Chemotaxis Core Signaling Units Indicate a Constrained Kinase-off State
Alise R Muok, Teck Khiang Chua, Madhur Srivastava, Wen Yang, Zach Maschmann, Petr P Borbat, Jenna Chong, Sheng Zhang, Jack H Freed, Ariane Briegel, Brian R Crane

Journal: Science Signaling
Year: 2020
Issue: Volume 13, pages eabc1328
DOI: 10.1126/scisignal.abc1328
PMCID: PMC7790435
Grants: NIGMS P41GM103521

Insights into histidine kinase activation mechanisms from the monomeric blue light sensor EL346
Igor Dikiy, Uthama R Edupuganti, Rinat R Abzalimov, Peter P Borbat, Madhur Srivastava, Jack H Freed, Kevin H Gardner

Journal: PNAS
Year: 2019
Issue: 116 (11) 4963-4972
DOI: 10.1073/pnas.1813586116
Grants: NIH P41 GM103521

Cofactors are essential constituents of stable and seeding-active tau fibrils
Yann Fichou, Yanxian Lin, Jennifer N Rauch, Michael Vigers, Zhikai Zeng, Madhur Srivastava, Timothy J Keller, Jack H Freed, Kenneth S Kosik,
Songi Han

Journal: PNAS
Year: 2018
Issue: 115 (52) 13234-13239
DOI: 10.1073/pnas.1810058115
Grants: NIH P41 GM103521

Unraveling Power Consumption Pattern Using Multidimensional Scaling and Clustering Analysis

Localized Reconstruction of Multimodal Distance Distribution from DEER data of Biopolymers

Analysis of Small-Molecule Mixtures by Super-Resolved 1H NMR Spectroscopy

Insights into histidine kinase activation mechanisms from the monomeric blue light sensor EL346

Cofactors are essential constituents of stable and seeding-active tau fibrils

Analysis of Small-Molecule Mixtures by Super-Resolved ¹H NMR Spectroscopy